Publications

An up-to-date publication list is available at http://www.st-andrews.ac.uk/profile/imls

Adult Stem Cells Host Intracellular Symbionts: The Poriferan Archetype
Ereskovsky, A., Rinkevich, B. & Somorjai, I. M. L., Feb 2022, Advances in Aquatic Invertebrate Stem Cell Research. : From Basic Research to Innovative Applications. Ballarin, L., Rinkevich, B. & Hobmayer, B. (eds.). MDPI, p. 65-93
Research output: Chapter in Book/Report/Conference proceedingChapter

A pan-metazoan concept for adult stem cells: the wobbling Penrose landscape
Rinkevich, B., Ballarin, L., Martinez, P., Somorjai, I. M. L., Ben-Hamo, O., Borisenko, I., Berezikov, E., Ereskovsky, A., Gazave, E., Khnykin, D., Manni, L., Petukhova, O., Rosner, A., Röttinger, E., Spagnuolo, A., Sugni, M., Tiozzo, S. & Hobmayer, B., 6 Oct 2021, (E-pub ahead of print) In: Biological Reviews. Early View, 27 p.
Research output: Contribution to journalComment/debatepeer-review

Epidermal changes during tail regeneration in the Bahamas lancelet, Asymmetron lucayanum (Cephalochordata)
Holland, N. D. & Somorjai, I. M. L., 7 Jan 2021, In: Acta Zoologica.
Research output: Contribution to journalArticlepeer-review

JNK mediates differentiation, cell polarity and apoptosis during amphioxus development by regulating actin cytoskeleton dynamics and ERK signalling
Somorjai, I. M. L., Ehebauer, M. T., Escriva, H. & Garcia-Fernandez, J., 29 Oct 2021, In: Frontiers in Cell and Developmental Biology. 9, 24 p., 749806.
Research output: Contribution to journalArticlepeer-review

Tail regeneration in a cephalochordate, the Bahamas lancelet, Asymmetron lucayanum
Holland, N. D. & Somorjai, I. M. L., Feb 2021, In: Journal of Morphology. 282, 2, p. 217-229
Research output: Contribution to journalArticlepeer-review

Beyond adult stem cells: dedifferentiation as a unifying mechanism underlying regeneration in invertebrate deuterostomes
Ferrario, C., Sugni, M., Somorjai, I. M. L. & Ballarin, L., 20 Oct 2020, In: Frontiers in Cell and Developmental Biology. 8, 25 p., 587320.
Research output: Contribution to journalReview articlepeer-review

Serial blockface SEM suggests that stem cells may participate in adult notochord growth in an invertebrate chordate, the Bahamas lancelet
Holland, N. D. & Somorjai, I. M. L., 17 Oct 2020, In: EvoDevo. 11, 15 p., 22.
Research output: Contribution to journalArticlepeer-review

The sensory peripheral nervous system in the tail of a cephalochordate studied by serial blockface scanning electron microscopy (SBSEM)
Holland, N. & Somorjai, I. M. L., 15 Oct 2020, In: The Journal of Comparative Neurology. 528, 15, p. 2569-2582 14 p.
Research output: Contribution to journalArticlepeer-review

Light sheet microscopy with acoustic sample confinement
Yang, Z., Cole, K. L. H., Qiu, Y., Somorjai, I. M. L., Wijesinghe, P., Nylk, J., Cochran, S., Spalding, G. C., Lyons, D. A. & Dholakia, K., 8 Feb 2019, In: Nature Communications. 10, 8 p., 669.
Research output: Contribution to journalArticlepeer-review

Pax3/7 duplicated and diverged independently in amphioxus, the basal chordate lineage
Barton-Owen, T., Ferrier, D. E. K. & Somorjai, I. M. L., 20 Jun 2018, In: Scientific Reports. 8, 11 p., 9414.
Research output: Contribution to journalArticlepeer-review

A revised spiralian homeobox gene classification incorporating new polychaete transcriptomes reveals a diverse TALE class and a divergent Hox gene
Barton-Owen, T., Szabó, R., Somorjai, I. M. L. & Ferrier, D. E. K., 1 Sep 2018, In: Genome Biology and Evolution. 10, 9, p. 2151–2167 17 p.
Research output: Contribution to journalArticlepeer-review

Amphioxus functional genomics and the origins of vertebrate gene regulation
Marletaz, F., Firbas, P., Maeso, I., Tena, J., Bogdanovic, O., Perry, M., Wyatt, C., de la Calle-Mustienes, E., Bertrand, S., Burguera, D., Acemel, R., van Heeringen, S., Naranjo, S., Herrera-Ubeda, C., Skvortsova, K., Jimenez-Gancedo, S., Aldea, D., Marquez, Y., Buono, L., Kozmikova, I., Permanyer, J., Louis, A., Albuixech-Crespo, B., Le Petillon, Y., Leon Florian, A., Subirana, L., Balwierz, P. J., Duckett, P., Farahani, E., Aury, J. M., Mangenot, S., Wincker, P., Albalat, R., Benito-Gutierrez, E., Canestro, C., Castro, F., D'Aniello, S., Ferrier, D. E. K., Huang, S., Laudet, V., Marais, G., Pontarotti, P., Schubert, M., Seitz, H., Somorjai, I. M. L., Takahashi, T., Mirabeau, O., Xu, A., Yu, J-K., Carninci, P., Martinez-Morales, J., Crollius, H., Kozmik, Z., Weirauch, M., Garcia-Fernandez, J., Lister, R., Lenhard, B., Holland, P., Escriva, H., Gomez-Skarmeta, J. L. & Irimia, M., 21 Nov 2018, In: Nature. 564, 7734, p. 64-70 29 p.
Research output: Contribution to journalArticlepeer-review

MARISTEM- Stem cells of marine/aquatic invertebrates: from basic research to innovative applications
Ballarin, L., Rinkevich, B., Bartscherer, K., Burzynski, A., Cambier, S., Cammarata, M., Domart-Coulon, I., Drobne, D., Encinas, J., Frank, U., Geneviere, A-M., Hobmayer, B., Lohelaid, H., Lyons, D., Martinez, P., Oliveri, P., Peric, L., Piraino, S., Ramsak, A., Rakers, S., Rentzsch, F., Rosner, A., Henriques da Silva, T., Somorjai, I. M. L., Suleiman, S. & Varela Coelho, A., 15 Feb 2018, In: Sustainability. 10, 2, 21 p., 526.
Research output: Contribution to journalArticlepeer-review

The amphioxus regeneration model: 1st general meeting and working group meetings of the COST Action 16203: STEM CELLS OF MARINE/AQUATIC INVERTEBRATES: FROM BASIC RESEARCH TO INNOVATIVE APPLICATIONS (MARISTEM), February 5-6, 2018, Marine Biology Station, National Institute of Biology, Piran, Slovenia
Somorjai, I. M. L., 29 Mar 2018, In: Invertebrate Survival Journal. 15, p. 104-115
Research output: Contribution to journalAbstractpeer-review

The evolution of ependymin-related proteins
McDougall, C., Hammond, M., Dailey, S. C., Somorjai, I. M. L., Cummins, S. & Degnan, B., 4 Dec 2018, In: BMC Evolutionary Biology. 18, 13 p., 182.
Research output: Contribution to journalArticlepeer-review

Wnt evolution and function shuffling in liberal and conservative chordate genomes
Somorjai, I. M. L., Marti-Solans, J., Diaz-Gracia, M., Nishida, H., Imai, K., Escriva, H., Cañestro, C. & Albalat, R., 25 Jul 2018, In: Genome Biology. 19, 17 p., 98.
Research output: Contribution to journalArticlepeer-review

Amphioxus sp5 is a member of a conserved SP complement, and is modulated by Wnt/β-catenin signalling
Dailey, S. C., Kozmikova, I. & Somorjai, I. M. L., 21 Dec 2017, In: International Journal of Developmental Biology. 61, 10/11/12, p. 723-732 10 p.
Research output: Contribution to journalArticlepeer-review

Amphioxus regeneration: evolutionary and biomedical implications
Somorjai, I. M. L., 21 Dec 2017, In: International Journal of Developmental Biology. 61, 10/11/12, p. 689-696 8 p.
Research output: Contribution to journalReview articlepeer-review

Developmental cell-cell communication pathways in the cephalochordate amphioxus: actors and functions
Bertrand, S., Le Petillon, Y., Somorjai, I. M. L. & Escriva, H., 21 Dec 2017, In: International Journal of Developmental Biology. 61, 10/11/12, p. 697-722 26 p.
Research output: Contribution to journalReview articlepeer-review

Molecular regionalization of the developing amphioxus neural tube challenges major partitions of the vertebrate brain
Albuixech-Crespo, B., López-Blanch, L., Burguera, D., Maeso, I., Sánchez Arrones, L., Moreno-Bravo, J. A., Somorjai, I., Pascual-Anaya, J., Puelles, E., Bovolenta, P., Garcia-Fernàndez, J., Puelles, L., Irimia, M. & Ferran, J. L., 19 Apr 2017, In: PLoS Biology. 15, 4, 34 p., e2001573.
Research output: Contribution to journalArticlepeer-review

Asymmetric distribution of pl10 and bruno2, new members of a conserved core of early germline determinants in cephalochordates
Dailey, S. C., Planas, R. F., Espier, A. R., Garcia-Fernandez, J. & Somorjai, I. M. L., 22 Jan 2016, In: Frontiers in Ecology and Evolution. 3, 156.
Research output: Contribution to journalArticlepeer-review

Evolution of the role of RA and FGF signals in the control of somitogenesis in chordates
Bertrand, S., Aldea, D., Oulion, S., Subirana, L., de Lera, A. R., Somorjai, I. M. L. & Escriva, H., 15 Sep 2015, In: PLoS One. 10, 9, 16 p., e0136587.
Research output: Contribution to journalArticlepeer-review

The evolutionary origins of chordate hematopoeisis and vertebrate endothelia
Pascual Anaya, J., Albuixech Crespo, B., Somorjai, I. M. L., Carmona, R., Oisi, Y., Àlvarez, S., Kuratani, S., Muñoz Chápuli, R. & Garcia Fernandez, J., 2013, In: Developmental Biology.
Research output: Contribution to journalArticlepeer-review

Amphioxus makes the cut-again
Somorjai, I. M. L., Escrivà, H. & Garcia-Fernàndez, J., 2012, In: Communicative & Integrative Biology. 5, 5, p. 499-502 3 p.
Research output: Contribution to journalArticlepeer-review

Stem cells: A view from the roots
Somorjai, I. M. L., Lohmann, J. U., Holstein, T. W. & Zhao, Z., Jun 2012, In: Biotechnology Journal. 7, 6, p. 704-722 19 p.
Research output: Contribution to journalReview articlepeer-review

The Eutherian Armcx genes regulate mitochondrial trafficking in neurons and interact with Miro and Trak2
Lopez-Domenech, G., Serrat, R., Mirra, S., D'Aniello, S., Somorjai, I., Abad, A., Vitureira, N., Garcia-Arumi, E., Teresa Alonso, M., Rodriguez-Prados, M., Burgaya, F., Andreu, A. L., Garcia-Sancho, J., Trullas, R., Garcia-Fernandez, J. & Soriano, E., May 2012, In: Nature Communications. 3, p. - 12 p., 814.
Research output: Contribution to journalArticlepeer-review

Vertebrate-like regeneration in the invertebrate chordate amphioxus
Somorjai, I. M. L., Somorjai, R. L., Garcia-Fernandez, J. & Escriva, H., 10 Jan 2012, In: Proceedings of the National Academy of Sciences of the United States of America. 109, 2, p. 517-522 6 p.
Research output: Contribution to journalArticlepeer-review

Amphioxus FGF signaling predicts the acquisition of vertebrate morphological traits
Bertrand, S., Camasses, A., Somorjai, I. M. L., Belgacem, M. R., Chabrol, O., Escande, M-L., Pontarotti, P. & Escriva, H., 31 May 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, 22, p. 9160-9165 6 p.
Research output: Contribution to journalArticlepeer-review

D-Aspartic acid is a novel endogenous neurotransmitter
D'Aniello, S., Somorjai, I. M. L., Garcia-Fernandez, J., Topo, E. & D'Aniello, A., Mar 2011, In: FASEB Journal. 25, 3, p. 1014-1027 14 p.
Research output: Contribution to journalArticlepeer-review

Stepwise assembly of the Nova-regulated alternative splicing network in the vertebrate brain
Irimia, M., Denuc, A., Burguera, D., Somorjai, I., Martin-Duran, J. M., Genikhovich, G., Jimenez-Delgado, S., Technau, U., Roy, S. W., Marfany, G. & Garcia-Fernandez, J., 29 Mar 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, 13, p. 5319-5324 6 p.
Research output: Contribution to journalArticlepeer-review

FGFRL1 is a neglected putative actor of the FGF signalling pathway present in all major metazoan phyla
Bertrand, S., Somorjai, I., Garcia-Fernandez, J., Lamonerie, T. & Escriva, H., 9 Sep 2009, In: BMC Evolutionary Biology. 9, 14 p., 226.
Research output: Contribution to journalArticlepeer-review

Development of a semi-closed aquaculture system for monitoring of individual amphioxus (Branchiostoma lanceolatum), with high survivorship
Somorjai, I. M. L., Camasses, A., Rivière, B. & Escrivà, H., 2008, In: Aquaculture. 281, 1-4, p. 145-150
Research output: Contribution to journalArticlepeer-review

Evidence for stasis and not genetic piracy in developmental expression patterns of Branchiostoma lanceolatum and Branchiostoma floridae, two amphioxus species that have evolved independently over the course of 200 Myr
Somorjai, I., Bertrand, S., Camasses, A., Haguenauer, A. & Escriva, H., Dec 2008, In: Development Genes and Evolution. 218, 11-12, p. 703-713 11 p.
Research output: Contribution to journalArticlepeer-review

Wingless signalling alters the levels, subcellular distribution and dynamics of armadillo and E-Cadherin in third instar larval wing imaginal discs
Somorjai, I. M. L. & Martinez-Arias, A., 6 Aug 2008, In: PLoS One. 3, 8, 19 p., e2893.
Research output: Contribution to journalArticlepeer-review

Taxonomic chaos in Asian ranid frogs: An initial phylogenetic resolution
Chen, L., Murphy, R., Lathrop, A., Ngo, A., Orlov, N., Ho, C. T. & Somorjai, I. M. L., 2005, In: Herpetological Journal. 15, 4, p. 231-243
Research output: Contribution to journalArticlepeer-review